ABOUT THIS RECORDspecies: Drosophila pseudoobscura
miRNA family: miR-iab
source: miRBase, original name: dps-mir-iab-8 (MI0011626)
Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACGTATACTGAAGGTATACC miRNA* ATACATTCAGTATACGTATA mismatches: 1 bulges: 2 |
pre-miRNA
TGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGT
dot-bracket secondary structure
.(((.((((..(.((((((.((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))))))))).)..)))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
TGCTGGTGTTTCCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTATACGAAGTCGCACAGGT
dot-bracket secondary structure
.(((.((((..(.((((((.((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))))))))).)..)))).)))
SIMILARITIES| miRBase dsi-mir-iab-8: 1e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 8e-39 |
Identical with: dpe-mir-iab-4 from miRBase (MNEST036896) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
