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ABOUT THIS RECORD

ID: MNEST037261
species: Drosophila simulans
miRNA family: mir-3
source: miRBase, original name: dsi-mir-318 (MI0009474)

Taxonomy by NCBI:
Drosophila simulans melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACTGGGCTTTGTTTATCTCA

miRNA*
GGATACACACAGTTCAGTTTTG

mismatches: 4
bulges: 0

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pre-miRNA
TTTATGGGATACACACAGTTCAGTTTTGTCACACTTTAAGCATCACTGGGCTTTGTTTATCTCATGAG

dot-bracket secondary structure
.((((((((((.(((.((((((((..(((..........)))..)))))))).))).)))))))))).


SIMILARITIES
miRBase der-mir-318: 1e-30

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-318: 7e-32

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC, Nat Genet. 42:6-9(2010)., "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila"
[2] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"




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