ABOUT THIS RECORDspecies: Locusta migratoria
miRNA family: mir-10
source: miRBase, original name: lmi-mir-10 (MI0010644)
Taxonomy by NCBI:
Locusta migratoria Locusta Oedipodinae Acrididae Acridoidea Acridomorpha Caelifera Orthoptera Orthopteroidea Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGATCCGAATTTGT miRNA* AAATTCGGTTCTAGAGAGGTTT mismatches: 3 bulges: 1 |
pre-miRNA
TACCCTGTAGATCCGAATTTGTTTGACATAGTGCGACAAATTCGGTTCTAGAGAGGTTT
dot-bracket secondary structure
.(((((.((((.(((((((((((..((...))..))))))))))).)))).)).)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wei Y, Chen S, Yang P, Ma Z, Kang L, Genome Biol. 10:R6(2009)., "Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust"
TACCCTGTAGATCCGAATTTGTTTGACATAGTGCGACAAATTCGGTTCTAGAGAGGTTT
dot-bracket secondary structure
.(((((.((((.(((((((((((..((...))..))))))))))).)))).)).)))..
SIMILARITIES| miRBase api-mir-10: 3e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 5e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wei Y, Chen S, Yang P, Ma Z, Kang L, Genome Biol. 10:R6(2009)., "Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust"
