ABOUT THIS RECORDspecies: Nasonia vitripennis
miRNA family: mir-125
source: miRBase, original name: nvi-mir-125 (MI0014740)
Taxonomy by NCBI:
Nasonia vitripennis Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTAACTTGTGA miRNA* ACAGGCTAGATTCTCTGGTAT mismatches: 5 bulges: 1 |
pre-miRNA
ATAAAGCCTGCCGCCGCGTCGCCGGTTCCCTGAGACCCTAACTTGTGACGTCGCGTACGATATCTCACAGGCTAGATTCTCTGGTATTGGCGATGAGTGC
TGCCTTTTGA
dot-bracket secondary structure
.........((.(((.((((((((((.((..((((..(((.(((((((.((((....))))...))))))).)))..)))).)).)))))))))).).))
.)).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van, Science. 327:343-348(2010)., "Functional and evolutionary insights from the genomes of three parasitoid Nasonia species"
ATAAAGCCTGCCGCCGCGTCGCCGGTTCCCTGAGACCCTAACTTGTGACGTCGCGTACGATATCTCACAGGCTAGATTCTCTGGTATTGGCGATGAGTGC
TGCCTTTTGA
dot-bracket secondary structure
.........((.(((.((((((((((.((..((((..(((.(((((((.((((....))))...))))))).)))..)))).)).)))))))))).).))
.)).......
SIMILARITIES| miRBase nlo-mir-125: 6e-52 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 1e-25 |
Identical with: nlo-mir-125 from miRBase (MNEST037610) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van, Science. 327:343-348(2010)., "Functional and evolutionary insights from the genomes of three parasitoid Nasonia species"
