ABOUT THIS RECORD

ID: MNEST037699
species: Tribolium castaneum
miRNA family: mir-9
source: miRBase, original name: tca-mir-9b (MI0008935)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
TTGACGACCGTAAGTTTCTTTGTTTTTGGTTCCAACAGGTGGGGGCCGATTTTGTTACTTTGGTAATTTAGCGTTTGTGATTTTATTTGAGTCATAAAGC
TAGATTACCAAAGCAATGCGGTTGGCATTGCGTCGTGGAGATTGGAGTTGGAATAAGAAGACGTTCATT

dot-bracket secondary structure
.....((.(((...((((((...((((..((((((((.(((.((((((((..((((.(((((((((((((((.((((((((((.....))))))))))))
))))))))))))).))))..)))))).)).)).).))....))))))..)))).))))))))).))...


SIMILARITIES

miRBase tca-mir-9b: 6e-93 PMRD no hits microPC no hits

UniProt no hits RFAM mir-9: 1e-26

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references
[1] Luo Q, Zhou Q, Yu X, Lin H, Hu S, Yu J, J Genet Genomics. 35:349-355(2008)., "Genome-wide mapping of conserved microRNAs and their host transcripts in Tribolium castaneum"
[2] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"