ABOUT THIS RECORDspecies: Tribolium castaneum
miRNA family: mir-29
source: miRBase, original name: tca-mir-29 (MI0016349)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGTTTTCGTGTGGTGGTGAG miRNA* TAGCACCATATGAAATCAGTTC mismatches: 4 bulges: 0 |
pre-miRNA
TTTGTGGTGGAACAATAGTTGTAGGATTTGGCTTTGGGCACTGTTTTCGTGTGGTGGTGAGATTTTATTTTGATTCTAGCACCATATGAAATCAGTTCTT
GTACCAAATACCAGCGAAATACACCAAGTG
dot-bracket secondary structure
....(((((.........((((.((((((((...((((.((((.((((((((((((.((..(((.......)))..)).)))))))))))).)))).)))
)..)))))).)).))))....)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
TTTGTGGTGGAACAATAGTTGTAGGATTTGGCTTTGGGCACTGTTTTCGTGTGGTGGTGAGATTTTATTTTGATTCTAGCACCATATGAAATCAGTTCTT
GTACCAAATACCAGCGAAATACACCAAGTG
dot-bracket secondary structure
....(((((.........((((.((((((((...((((.((((.((((((((((((.((..(((.......)))..)).)))))))))))).)))).)))
)..)))))).)).))))....)))))....
SIMILARITIES| miRBase tca-mir-29: 9e-70 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 0.0005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
