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ABOUT THIS RECORD
ID:
MNEST037863
species:
Tribolium castaneum
source:
miRBase, original name:
tca-mir-3806
(
MI0016263
)
Taxonomy by NCBI:
Tribolium castaneum
Tribolium
Tenebrionidae
Tenebrionoidea
Cucujiformia
Polyphaga
Coleoptera
Endopterygota
Neoptera
Pterygota
Dicondylia
Insecta
Hexapoda
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGTGCATCCGGGAGTAGATCTAG
miRNA*
GTTTCTGTTCCCGGATTGTCACATAT
mismatches:
2
bulges:
2
View larger
pre-miRNA
AACAAAAAGTTTTATTTTTCAGAGCATTTCAACCAATTTCCT
GTTTCTGTTCCCGGATTGTCACATAT
TTTTTAAATATTAAAT
ATGTGCATCCGGGAGT
AGATCTAG
GGGGTTGGTACAATCAACGGCTTCGTATTTGATTTTAT
dot-bracket secondary structure
.....((((((..((....(..(((......((((((..(((
(..(((((((((((((.(.(((((((
((..........))))
))))))))))))))))
)))..)))
)..))))))..........)))..).))..))))))..
SIMILARITIES
miRBase
tca-mir-3806
:
3e-79
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
SOLID
references
[
1
] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S,
Genome Biol Evol. 2:686-696(2010).
,
"Functional shifts in insect microRNA evolution"