ABOUT THIS RECORDspecies: Tribolium castaneum
miRNA family: mir-iab-4
source: miRBase, original name: tca-mir-iab-4 (MI0008933)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGTATACTGAATGTATCCTGA miRNA* CGGTATACCTTCAGTATACGTAA mismatches: 2 bulges: 1 |
pre-miRNA
TTAAACCCCCTGTACGTATACTGAATGTATCCTGAGTGTTTTCTGTCCGGTATACCTTCAGTATACGTAACAGGAGGCCAC
dot-bracket secondary structure
.....((.(((((((((((((((((.((((((.((..(....)..)).)).)))).)))))))))))).))))).))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE, Dev Genes Evol. 218:127-139(2008)., "Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters"
[2] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[3] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
TTAAACCCCCTGTACGTATACTGAATGTATCCTGAGTGTTTTCTGTCCGGTATACCTTCAGTATACGTAACAGGAGGCCAC
dot-bracket secondary structure
.....((.(((((((((((((((((.((((((.((..(....)..)).)).)))).)))))))))))).))))).))....
SIMILARITIES| miRBase tca-mir-iab-4: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 2e-39 |
Identical with: tca-mir-iab-8 from miRBase (MNEST038086) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE, Dev Genes Evol. 218:127-139(2008)., "Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters"
[2] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[3] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
