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ABOUT THIS RECORD

ID: MNEST038084
species: Tribolium castaneum
miRNA family: miR-iab
source: miRBase, original name: tca-mir-iab-4 (MI0008933)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGTATACCTTCAGTATACGTAAC

miRNA*
ACGTATACTGAATGTATCCTGA

mismatches: 2
bulges: 2

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pre-miRNA
TTAAACCCCCTGTACGTATACTGAATGTATCCTGAGTGTTTTCTGTCCGGTATACCTTCAGTATACGTAACAGGAGGCCAC

dot-bracket secondary structure
.....((.(((((((((((((((((.((((((.((..(....)..)).)).)))).)))))))))))).))))).))....


SIMILARITIES
miRBase tca-mir-iab-4: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-iab-4: 2e-39

Identical with: tca-mir-iab-8 from miRBase (MNEST038086)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE, Dev Genes Evol. 218:127-139(2008)., "Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters"
[2] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[3] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"




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