ABOUT THIS RECORDspecies: Brugia malayi
miRNA family: mir-99
source: miRBase, original name: bma-mir-100b (MI0013339)
Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGAACTTGTG miRNA* TGAGGTCGGCATTCGGGTAGA mismatches: 8 bulges: 1 |
pre-miRNA
GTGTGAGGTAGCACACGGTCAACCCGTAGATCCGAACTTGTGTTGAGATTTTCTTCCGAACATGAGGTCGGCATTCGGGTAGACTGCGTGT
dot-bracket secondary structure
..........((((.(((((.(((((.....((((.((..((((..((......))..))))..)).))))....))))).))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
GTGTGAGGTAGCACACGGTCAACCCGTAGATCCGAACTTGTGTTGAGATTTTCTTCCGAACATGAGGTCGGCATTCGGGTAGACTGCGTGT
dot-bracket secondary structure
..........((((.(((((.(((((.....((((.((..((((..((......))..))))..)).))))....))))).))))).))))
SIMILARITIES| miRBase bfl-mir-100: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 2e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
