ABOUT THIS RECORDspecies: Brugia malayi
miRNA family: mir-133
source: miRBase, original name: bma-mir-133 (MI0013343)
Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCTA miRNA* CCTGGTTGTAGTCGAACCAAAT mismatches: 4 bulges: 1 |
pre-miRNA
TTGATTGGACAAGGTATGCTATGACGGACATTTACATACCTGGTTGTAGTCGAACCAAATTGTTATATTTTTAAAATCAATTGGTCCCCTTCAACCAGCT
ATGTTTCTCCTCCTGTAAACATCTAGTTAA
dot-bracket secondary structure
.((((((((....((.(((...((.(((.....(((((.(((((((.((..((.((((.(((...............)))))))))..)).))))))).)
))))...)))))..))).)).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
TTGATTGGACAAGGTATGCTATGACGGACATTTACATACCTGGTTGTAGTCGAACCAAATTGTTATATTTTTAAAATCAATTGGTCCCCTTCAACCAGCT
ATGTTTCTCCTCCTGTAAACATCTAGTTAA
dot-bracket secondary structure
.((((((((....((.(((...((.(((.....(((((.(((((((.((..((.((((.(((...............)))))))))..)).))))))).)
))))...)))))..))).)).)))))))).
SIMILARITIES| miRBase aae-mir-133: 0.000006 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 8e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
