ABOUT THIS RECORDspecies: Caenorhabditis briggsae
miRNA family: mir-1
source: miRBase, original name: cbr-mir-1 (MI0000493)
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGTA miRNA* CATACTTCCTTACATGCCCATA mismatches: 2 bulges: 1 |
pre-miRNA
TGCTGTGCCGAGCTGCATACTTCCTTACATGCCCATACTGTACTGTGAATGGATATGGAATGTAAAGAAGTATGTAGAACGGAATCTAACGGCG
dot-bracket secondary structure
.(((((.(((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..)))......))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lee RC, Ambros V, Science. 294:862-864(2001)., "An extensive class of small RNAs in Caenorhabditis elegans"
[2] Lau NC, Lim LP, Weinstein EG, Bartel DP, Science. 294:858-862(2001)., "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
TGCTGTGCCGAGCTGCATACTTCCTTACATGCCCATACTGTACTGTGAATGGATATGGAATGTAAAGAAGTATGTAGAACGGAATCTAACGGCG
dot-bracket secondary structure
.(((((.(((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..)))......))))).
SIMILARITIES| miRBase crm-mir-1: 6e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lee RC, Ambros V, Science. 294:862-864(2001)., "An extensive class of small RNAs in Caenorhabditis elegans"
[2] Lau NC, Lim LP, Weinstein EG, Bartel DP, Science. 294:858-862(2001)., "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
