ABOUT THIS RECORDspecies: Caenorhabditis briggsae
miRNA family: mir-354
source: miRBase, original name: cbr-mir-354 (MI0001414)
SEQUENCE & STRUCTURE| miRNA ACCTTGTTTGTTGCTGCTCCT miRNA* GTGCGGCTACAGACGGGTAT mismatches: 3 bulges: 1 |
pre-miRNA
CCAGAGCCGACTAAGTGCCTTGGTGCGGCTACAGACGGGTATCCGGCTCGATGTTCATACACCGCGACTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCT
TTTGGTTTT
dot-bracket secondary structure
..((((((((...........((.(((((.(((((((((((...((.(((.(((....)))...)))......))...)))).))))))).))))).)).
.))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
CCAGAGCCGACTAAGTGCCTTGGTGCGGCTACAGACGGGTATCCGGCTCGATGTTCATACACCGCGACTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCT
TTTGGTTTT
dot-bracket secondary structure
..((((((((...........((.(((((.(((((((((((...((.(((.(((....)))...)))......))...)))).))))))).))))).)).
.))))))))
SIMILARITIES| miRBase cel-mir-354: 8e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-354: 5e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
