ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-256 (MI0000333)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGCATAGAAGACTGTA miRNA* CAGAGGCTTACTATGAGACGGTCAAG mismatches: 5 bulges: 5 |
pre-miRNA
GCAAGGAGTGCAGAGGCTTACTATGAGACGGTCAAGAGGCGCCTCCGTCACGTGGATACGTCGGGTGGAATGCATAGAAGACTGTACTCAAAAAATTTTA
C
dot-bracket secondary structure
.....((((((((...(((.(((((......(((...((((..((((.....))))..))))...)))....)))))))).))))))))...........
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D, Curr Biol. 13:807-818(2003)., "MicroRNAs and other tiny endogenous RNAs in C. elegans"
[2] Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP, Genes Dev. 17:991-1008(2003)., "The microRNAs of Caenorhabditis elegans"
GCAAGGAGTGCAGAGGCTTACTATGAGACGGTCAAGAGGCGCCTCCGTCACGTGGATACGTCGGGTGGAATGCATAGAAGACTGTACTCAAAAAATTTTA
C
dot-bracket secondary structure
.....((((((((...(((.(((((......(((...((((..((((.....))))..))))...)))....)))))))).))))))))...........
.
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D, Curr Biol. 13:807-818(2003)., "MicroRNAs and other tiny endogenous RNAs in C. elegans"
[2] Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP, Genes Dev. 17:991-1008(2003)., "The microRNAs of Caenorhabditis elegans"
