ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-258
source: miRBase, original name: cel-mir-258-2 (MI0010691)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTTTTGAGAGGAATCCTTTT miRNA* AAGGAAGCCTGCACGAAGTTTT mismatches: 5 bulges: 1 |
pre-miRNA
GCAATGGTTTTGAGAGGAATCCTTTTACATATTTGTTGAAGTTTTCGCTCGAATTTGTGGTCGAATACTGTAGAAGGAAGCCTGCACGAAGTTTTG
dot-bracket secondary structure
.......(((((.((((..((((((((((((((((.....(..(((....)))..).....)))))).))))))))))..))).).))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D, Curr Biol. 13:807-818(2003)., "MicroRNAs and other tiny endogenous RNAs in C. elegans"
GCAATGGTTTTGAGAGGAATCCTTTTACATATTTGTTGAAGTTTTCGCTCGAATTTGTGGTCGAATACTGTAGAAGGAAGCCTGCACGAAGTTTTG
dot-bracket secondary structure
.......(((((.((((..((((((((((((((((.....(..(((....)))..).....)))))).))))))))))..))).).))))).....
SIMILARITIES| miRBase cel-mir-258-1: 1e-49 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cel-mir-258-1 from miRBase (MNEST038362) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D, Curr Biol. 13:807-818(2003)., "MicroRNAs and other tiny endogenous RNAs in C. elegans"
