ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-268
source: miRBase, original name: cel-mir-268 (MI0000348)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAAGAATTAGAAGCAGTTTGGT miRNA* TCACTGCTTCTTGTTTTTTCTGC mismatches: 3 bulges: 1 |
pre-miRNA
GGAAGTGGCTTTGAAGCGGCAAGAATTAGAAGCAGTTTGGTGTCAGACACACTACTCACTCACTGCTTCTTGTTTTTTCTGCTTTCTTTGCTTTT
dot-bracket secondary structure
.((((..(....(((((((.((((((.(((((((((..((((..((.....))...)))).))))))))).)))))).)))))))..)..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J, Mol Cell. 11:1253-1263(2003)., "Computational and experimental identification of C. elegans microRNAs"
GGAAGTGGCTTTGAAGCGGCAAGAATTAGAAGCAGTTTGGTGTCAGACACACTACTCACTCACTGCTTCTTGTTTTTTCTGCTTTCTTTGCTTTT
dot-bracket secondary structure
.((((..(....(((((((.((((((.(((((((((..((((..((.....))...)))).))))))))).)))))).)))))))..)..)))).
SIMILARITIES| miRBase cbr-mir-268: 5e-21 PMRD no hits microPC no hits | UniProt no hits RFAM mir-268: 6e-24 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J, Mol Cell. 11:1253-1263(2003)., "Computational and experimental identification of C. elegans microRNAs"
