ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-271 (MI0000351)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCCGGGTGGGAAAGCATT miRNA* GTGTTTTTCAATCTGCGACT mismatches: 1 bulges: 2 |
pre-miRNA
AATAGAAAACGGGGCCCGCCGGCTCGCCGGGTGGGAAAGCATTCGACAGCAAGACGTGTTTTTCAATCTGCGACTCGGCGATTCCCATCATCACT
dot-bracket secondary structure
..........((((..(((((..((((.((((.(((((((((((........)).))))))))).))))))))..)))))..)))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J, Mol Cell. 11:1253-1263(2003)., "Computational and experimental identification of C. elegans microRNAs"
AATAGAAAACGGGGCCCGCCGGCTCGCCGGGTGGGAAAGCATTCGACAGCAAGACGTGTTTTTCAATCTGCGACTCGGCGATTCCCATCATCACT
dot-bracket secondary structure
..........((((..(((((..((((.((((.(((((((((((........)).))))))))).))))))))..)))))..)))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR
references
[1] Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J, Mol Cell. 11:1253-1263(2003)., "Computational and experimental identification of C. elegans microRNAs"
