ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-272 (MI0000352)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAGGCATGGGTGTTTG miRNA* GGCATGAATGTAGGCATG mismatches: 6 bulges: 0 |
pre-miRNA
CGCAGGCACGTGCAGGTATGTAGGCAGGCGTAGGCCCGTAGGCAAGTGTAGGTCTGCAGGCATGAATGTAGGCATGGGTGTTTGGAAGACCTGCG
dot-bracket secondary structure
(((..((.(.((((....)))))))..)))...(((....)))....((((((((.(((((((..(((....)))..)))))))..)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR, Solexa
references
[1] Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J, Mol Cell. 11:1253-1263(2003)., "Computational and experimental identification of C. elegans microRNAs"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
CGCAGGCACGTGCAGGTATGTAGGCAGGCGTAGGCCCGTAGGCAAGTGTAGGTCTGCAGGCATGAATGTAGGCATGGGTGTTTGGAAGACCTGCG
dot-bracket secondary structure
(((..((.(.((((....)))))))..)))...(((....)))....((((((((.(((((((..(((....)))..)))))))..)))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR, Solexa
references
[1] Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J, Mol Cell. 11:1253-1263(2003)., "Computational and experimental identification of C. elegans microRNAs"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
