ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-354
source: miRBase, original name: cel-mir-354 (MI0000753)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCTTGTTTGTTGCTGCTCCT miRNA* GTGCGGCTGCAGACGGGTAT mismatches: 3 bulges: 1 |
pre-miRNA
CAGAGCCGACTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCT
ATTGGTTTTG
dot-bracket secondary structure
(((((((((...........((.(((((.(((((((((((...((...((.(((..........))).))...))...)))).))))))).))))).)).
.)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
CAGAGCCGACTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCT
ATTGGTTTTG
dot-bracket secondary structure
(((((((((...........((.(((((.(((((((((((...((...((.(((..........))).))...))...)))).))))))).))))).)).
.)))))))))
SIMILARITIES| miRBase cbr-mir-354: 8e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-354: 3e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
