ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-356
source: miRBase, original name: cel-mir-356 (MI0000755)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCAACGCGAACAAATCA miRNA* ATTCGTTACGACGTGTCTCACC mismatches: 4 bulges: 3 |
pre-miRNA
TAAAGTTTCCTTGAGAACAATGTGGTTGAGCAACGCGAACAAATCATCAATGTAAATTTCAGCGGATTCGTTACGACGTGTCTCACCACATCGTTAGTAG
GATTTCAGAA
dot-bracket secondary structure
.......((((....(((.(((((((.(((..((((((((.((((.....((.......))...)))).))).)).)))..)))))))))).)))...))
))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
TAAAGTTTCCTTGAGAACAATGTGGTTGAGCAACGCGAACAAATCATCAATGTAAATTTCAGCGGATTCGTTACGACGTGTCTCACCACATCGTTAGTAG
GATTTCAGAA
dot-bracket secondary structure
.......((((....(((.(((((((.(((..((((((((.((((.....((.......))...)))).))).)).)))..)))))))))).)))...))
))........
SIMILARITIES| miRBase crm-mir-356: 0.000000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
