ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-360
source: miRBase, original name: cel-mir-360 (MI0000759)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACCGTAATCCCGTTCACAA miRNA* GTGACCGTTGTTACGGTCAAT mismatches: 3 bulges: 0 |
pre-miRNA
CATTCTGTTAGGAAGCATCAATGTGTTGTGACCGTTGTTACGGTCAATTTGCAAATTGAAAAAATGACCGTAATCCCGTTCACAATACATTGTTCGTTTT
CTCCAAAGGT
dot-bracket secondary structure
...(((...(((((((..(((((((((((((.((..((((((((((.(((..........))).))))))))))..)).)))))))))))))...)))))
))....))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR, Solexa, CLIPseq
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
[2] Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW, Nat Struct Mol Biol. 17:173-179(2010)., "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
[3] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
CATTCTGTTAGGAAGCATCAATGTGTTGTGACCGTTGTTACGGTCAATTTGCAAATTGAAAAAATGACCGTAATCCCGTTCACAATACATTGTTCGTTTT
CTCCAAAGGT
dot-bracket secondary structure
...(((...(((((((..(((((((((((((.((..((((((((((.(((..........))).))))))))))..)).)))))))))))))...)))))
))....))).
SIMILARITIES| miRBase cbr-mir-360: 0.00000009 PMRD no hits microPC no hits | UniProt no hits RFAM mir-360: 1e-56 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR, Solexa, CLIPseq
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
[2] Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW, Nat Struct Mol Biol. 17:173-179(2010)., "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
[3] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
