ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-789
source: miRBase, original name: cel-mir-789-1 (MI0005189)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGCCTGGGTCACCAATTGT miRNA* AATTGATGACCCAGACAAGGACT mismatches: 3 bulges: 0 |
pre-miRNA
TGTCCTGAAGGCAGGCAATTGATGACCCAGACAAGGACTAATCAAGATTGTCGATCTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGGCA
dot-bracket secondary structure
.((((((..(((.((((((((.((((((((.((.(((((((((.........))).)))))).)).)))))))).)))))))).)))..)).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP, Cell. 127:1193-1207(2006)., "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
TGTCCTGAAGGCAGGCAATTGATGACCCAGACAAGGACTAATCAAGATTGTCGATCTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGGCA
dot-bracket secondary structure
.((((((..(((.((((((((.((((((((.((.(((((((((.........))).)))))).)).)))))))).)))))))).)))..)).)))).
SIMILARITIES| miRBase cel-mir-789-2: 1e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-789: 2e-30 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP, Cell. 127:1193-1207(2006)., "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
