ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-1832 (MI0008202)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGCGGAGCGAATCGATGAT miRNA* CAGCGATTCGAACTCCGCCCACT mismatches: 3 bulges: 2 |
pre-miRNA
CAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGAT
dot-bracket secondary structure
((.(((((((..(((((((((((.((((.....)).))...)))))))))))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
CAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGAT
dot-bracket secondary structure
((.(((((((..(((((((((((.((((.....)).))...)))))))))))))))))).))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
