ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-1833 (MI0008203)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGGCTTGCGAAATAAGTGTGC miRNA* ACGCTTACTTCGCAAGCCTCGCG mismatches: 3 bulges: 0 |
pre-miRNA
ACGCTTACTTCGCAAGCCTCGCGCGTTTTCTTTTCAAGAGAAAAAGCGTGCGAGGCTTGCGAAATAAGTGTGC
dot-bracket secondary structure
(((((((.((((((((((((((((((((((((.....))))))..)))))))))))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
ACGCTTACTTCGCAAGCCTCGCGCGTTTTCTTTTCAAGAGAAAAAGCGTGCGAGGCTTGCGAAATAAGTGTGC
dot-bracket secondary structure
(((((((.((((((((((((((((((((((((.....))))))..)))))))))))))))))).)))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
