ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-2209
source: miRBase, original name: cel-mir-2209a (MI0010958)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGATCAGCGGTTACACTACA miRNA* GAGTGTAACCACTCTTCTCCTTC mismatches: 6 bulges: 1 |
pre-miRNA
GAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACA
dot-bracket secondary structure
.(((((((((.((..((((.((((((..........))).)))))))..)).)))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
GAGTGTAACCACTCTTCTCCTTCCGAGTATTGATTATCGAGAAGAGATCAGCGGTTACACTACA
dot-bracket secondary structure
.(((((((((.((..((((.((((((..........))).)))))))..)).)))))))))...
SIMILARITIES| miRBase cel-mir-2209b: 0.000003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
