ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-2221 (MI0010974)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGTGATACCAGACCGCTAGT miRNA* TGGCGGTTTGCATTCACTTACA mismatches: 4 bulges: 0 |
pre-miRNA
TACATTTATTCTTACTGTCCTCGAATACAAACTGGCGGTTTGCATTCACTTACATTTATAAGACAAAAATGCAAGTGATACCAGACCGCTAGTTTGTAAA
AGGGATAATTTTATGTGA
dot-bracket secondary structure
(((((..........((((((....(((((((((((((((((...((((((.(((((.........))))).))))))...)))))))))))))))))..
.)))))).....))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
TACATTTATTCTTACTGTCCTCGAATACAAACTGGCGGTTTGCATTCACTTACATTTATAAGACAAAAATGCAAGTGATACCAGACCGCTAGTTTGTAAA
AGGGATAATTTTATGTGA
dot-bracket secondary structure
(((((..........((((((....(((((((((((((((((...((((((.(((((.........))))).))))))...)))))))))))))))))..
.)))))).....))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
