ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-4806 (MI0017536)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACTTACCGGCTGAGCCATGC miRNA* ATAGCTCAGCCGGTAAGAGGC mismatches: 2 bulges: 0 |
pre-miRNA
GGATTCAGTGGCGAGCCACTTACCGGCTGAGCCATGCGCGCTGCGCTGCATAGCTCAGCCGGTAAGAGGCTTGCCTTTGGAGC
dot-bracket secondary structure
...(((((.((((((((.((((((((((((((.(((((((...))).)))).)))))))))))))).)))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
GGATTCAGTGGCGAGCCACTTACCGGCTGAGCCATGCGCGCTGCGCTGCATAGCTCAGCCGGTAAGAGGCTTGCCTTTGGAGC
dot-bracket secondary structure
...(((((.((((((((.((((((((((((((.(((((((...))).)))).)))))))))))))).)))))))).)))))..
SIMILARITIES| miRBase cel-mir-4806: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
