ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: mir-1829
source: miRBase, original name: cel-mir-4812 (MI0017542)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGAGCGCTTGTAGTGAGTTGT miRNA* AACCACTGCAATTTCTCTATTAC mismatches: 3 bulges: 3 |
pre-miRNA
AGAAGTAAGAGCGCTTGTAGTGAGTTGTCAAAAATTGAGTATGACAACCACTGCAATTTCTCTATTACATTTTTGG
dot-bracket secondary structure
....(((((((...((((((((.(((((((...........)))))))))))))))...))))..)))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
AGAAGTAAGAGCGCTTGTAGTGAGTTGTCAAAAATTGAGTATGACAACCACTGCAATTTCTCTATTACATTTTTGG
dot-bracket secondary structure
....(((((((...((((((((.(((((((...........)))))))))))))))...))))..)))........
SIMILARITIES| miRBase cel-mir-1829b: 0.000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1829: 5e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
