ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-4813 (MI0017543)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAATATACCGGATGGTCTGG miRNA* AGACTATCTAGGAAATATTGAACT mismatches: 1 bulges: 2 |
pre-miRNA
ATTTCACCAGACTATCTAGGAAATATTGAACTAATACAAATTTTAGTTCAATATACCGGATGGTCTGGTGAAAGCAA
dot-bracket secondary structure
.((((((((((((((((.((..((((((((((((........)))))))))))).))))))))))))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
ATTTCACCAGACTATCTAGGAAATATTGAACTAATACAAATTTTAGTTCAATATACCGGATGGTCTGGTGAAAGCAA
dot-bracket secondary structure
.((((((((((((((((.((..((((((((((((........)))))))))))).))))))))))))))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
