ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-4816 (MI0017546)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAAGTGGTTTTTGTAGATCAA miRNA* GATCTACAATTTTCGCACTTACAG mismatches: 3 bulges: 2 |
pre-miRNA
GTAAGTGGTTTTTGTAGATCAAAATAGTTAAGAAATTTTTTGATCTACAATTTTCGCACTTACAG
dot-bracket secondary structure
((((((((...(((((((((((((.((((....)))))))))))))))))....).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
[2] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
GTAAGTGGTTTTTGTAGATCAAAATAGTTAAGAAATTTTTTGATCTACAATTTTCGCACTTACAG
dot-bracket secondary structure
((((((((...(((((((((((((.((((....)))))))))))))))))....).)))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
[2] Jan CH, Friedman RC, Ruby JG, Bartel DP, Nature. 469:97-101(2011)., "Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs"
