ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-4927 (MI0017714)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGGTTTTTTCAAAATTTTTT miRNA* AAAATTTGGAAAAAAGTTCCAG mismatches: 2 bulges: 2 |
pre-miRNA
GTGGGTTTTTTCAAAATTTTTTTAATTAAATAAAAAAATTTGGAAAAAAGTTCCAG
dot-bracket secondary structure
.(((((((((((.(((((((((((......))))))))))).)))))))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
GTGGGTTTTTTCAAAATTTTTTTAATTAAATAAAAAAATTTGGAAAAAAGTTCCAG
dot-bracket secondary structure
.(((((((((((.(((((((((((......))))))))))).)))))))..)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
