ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-36
source: miRBase, original name: crm-mir-35e-1 (MI0011029)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACCGGGTGGAAACTGGTACG miRNA* TGCTGGTTTCGAACTCGGTAATA mismatches: 4 bulges: 1 |
pre-miRNA
ATGACGGGAACCGTGCTGGTTTCGAACTCGGTAATAGACCAGAAGAAAGCTATCACCGGGTGGAAACTGGTACGGGTCCCCGAGTCGT
dot-bracket secondary structure
(((((((((.((((((..(((((..(((((((.((((............)))).))))))).)))))..)))))).))))...)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
ATGACGGGAACCGTGCTGGTTTCGAACTCGGTAATAGACCAGAAGAAAGCTATCACCGGGTGGAAACTGGTACGGGTCCCCGAGTCGT
dot-bracket secondary structure
(((((((((.((((((..(((((..(((((((.((((............)))).))))))).)))))..)))))).))))...)))))
SIMILARITIES| miRBase crm-mir-35e-2: 0.00000000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-36: 1e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
