ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-39
source: miRBase, original name: crm-mir-39 (MI0011021)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACCGGGTATGAATCAGTTAG miRNA* AACTGTTTCTTTCCCCGGTAATA mismatches: 6 bulges: 1 |
pre-miRNA
TGAGATCCAGAGAGCCCAACTGTTTCTTTCCCCGGTAATAAACTTCAACACGACTATCACCGGGTATGAATCAGTTAGGCTCTTCTGGTATCTT
dot-bracket secondary structure
.(((((((((((((((.(((((.(((....((((((.(((..(........)..))).))))))...))).))))).))))).))))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
TGAGATCCAGAGAGCCCAACTGTTTCTTTCCCCGGTAATAAACTTCAACACGACTATCACCGGGTATGAATCAGTTAGGCTCTTCTGGTATCTT
dot-bracket secondary structure
.(((((((((((((((.(((((.(((....((((((.(((..(........)..))).))))))...))).))))).))))).))))).)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-36: 2e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
