ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-46
source: miRBase, original name: crm-mir-47 (MI0011061)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCATGGAGGCGCTCTCTTC miRNA* AGAGAGCATTCTGTTGACAGT mismatches: 1 bulges: 2 |
pre-miRNA
GAAAAAAGCCGAGTGAGACTGAAGAGAGCATTCTGTTGACAGTTCGATTCCGAACTCCTACTGTCATGGAGGCGCTCTCTTCAGGTGATCTCTGGCTAGT
TTTTC
dot-bracket secondary structure
(((((((((((((.....(((((((((((.((((((.((((((..((........))..))))))))))))..))))))))))).....))).))))..)
)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GAAAAAAGCCGAGTGAGACTGAAGAGAGCATTCTGTTGACAGTTCGATTCCGAACTCCTACTGTCATGGAGGCGCTCTCTTCAGGTGATCTCTGGCTAGT
TTTTC
dot-bracket secondary structure
(((((((((((((.....(((((((((((.((((((.((((((..((........))..))))))))))))..))))))))))).....))).))))..)
)))))
SIMILARITIES| miRBase cbr-mir-47: 7e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-46: 5e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
