ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-52
source: miRBase, original name: crm-mir-52-2 (MI0011080)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCCGTACATATGTTTCCGTGCT miRNA* CACGTTACAATATATGGGTCGC mismatches: 5 bulges: 2 |
pre-miRNA
TACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATTGTGCTCAATCACGTTACAATATATGGGTCGCCGGTCTTAGGCGGT
dot-bracket secondary structure
.(((.((((..((((.(.(((((((.((.(((...((((.((((........)))).))))..))))).))))))).).))))..)))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
TACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATTGTGCTCAATCACGTTACAATATATGGGTCGCCGGTCTTAGGCGGT
dot-bracket secondary structure
.(((.((((..((((.(.(((((((.((.(((...((((.((((........)))).))))..))))).))))))).).))))..)))).)))
SIMILARITIES| miRBase crm-mir-52-1: 7e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-52: 5e-46 |
Identical with: crm-mir-52-1 from miRBase (MNEST038514) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
