ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-9
source: miRBase, original name: crm-mir-79 (MI0011072)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAAAGCTAGGTTACCAAAGCT miRNA* CTTTGGTGATTCAGCTTAAATGA mismatches: 4 bulges: 1 |
pre-miRNA
GAATATCAAATAGAAAGTTTCCGATCTTTGGTGATTCAGCTTAAATGATAGACTCAATATGTTAGACTTCATAAAGCTAGGTTACCAAAGCTCGGCGGCC
GAATCTATCTTTTTTTTTCT
dot-bracket secondary structure
(((......(((((..((..((((.((((((((((..(((((..((((..(((.......))).....)))).)))))..)))))))))).))))..)).
...)))))........))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GAATATCAAATAGAAAGTTTCCGATCTTTGGTGATTCAGCTTAAATGATAGACTCAATATGTTAGACTTCATAAAGCTAGGTTACCAAAGCTCGGCGGCC
GAATCTATCTTTTTTTTTCT
dot-bracket secondary structure
(((......(((((..((..((((.((((((((((..(((((..((((..(((.......))).....)))).)))))..)))))))))).))))..)).
...)))))........))).
SIMILARITIES| miRBase cbr-mir-79: 1e-16 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 4e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
