ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-80
source: miRBase, original name: crm-mir-80 (MI0011115)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATCATTAGTTGAAAGCCG miRNA* GCTTTCGACATGATTCTAAAC mismatches: 2 bulges: 3 |
pre-miRNA
GGACACTCTTTCGCTCAGCTTTCGACATGATTCTAAACAATACGTCGAGACAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGATTTTGAGATATCCA
dot-bracket secondary structure
(((..(((..(((.((.((((((((((((((.((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GGACACTCTTTCGCTCAGCTTTCGACATGATTCTAAACAATACGTCGAGACAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGATTTTGAGATATCCA
dot-bracket secondary structure
(((..(((..(((.((.((((((((((((((.((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))).
SIMILARITIES| miRBase cbr-mir-80: 7e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-80: 9e-51 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
