ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-232
source: miRBase, original name: crm-mir-232-1 (MI0011034)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAATGCATCTTAACTGCGGTG miRNA* CCGTAGTTTCGATCATTTTATC mismatches: 3 bulges: 2 |
pre-miRNA
CGAGGTAAGTTGAAGTCTGATTGTCGGATCTCCGTAGTTTCGATCATTTTATCCTATCTCCAACAAAGCGATAAATGCATCTTAACTGCGGTGATCTGAA
TTCTTGGACACTTTTTTC
dot-bracket secondary structure
.((((.((((....(((..(...(((((((.((((((((..((((((((.(((((...........)).)))))))).)))..)))))))).))))))).
...)..))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
CGAGGTAAGTTGAAGTCTGATTGTCGGATCTCCGTAGTTTCGATCATTTTATCCTATCTCCAACAAAGCGATAAATGCATCTTAACTGCGGTGATCTGAA
TTCTTGGACACTTTTTTC
dot-bracket secondary structure
.((((.((((....(((..(...(((((((.((((((((..((((((((.(((((...........)).)))))))).)))..)))))))).))))))).
...)..))))))).))))
SIMILARITIES| miRBase crm-mir-232-2: 1e-62 PMRD no hits microPC no hits | UniProt no hits RFAM mir-232: 2e-49 |
Identical with: crm-mir-232-2 from miRBase (MNEST038557) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
