ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-242
source: miRBase, original name: crm-mir-242 (MI0011045)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCGTAGGCCTTTGCTTCG miRNA* CAGCAATCTCCTCCGCAATA mismatches: 5 bulges: 0 |
pre-miRNA
TCGAGTACCAACCACGTTAAGAATATTGCGTAGGCCTTTGCTTCGAAAGAAACACTTTACTGTTCGCAGCAATCTCCTCCGCAATATTTTTTGATGAATT
TGGTTAAAATTGAG
dot-bracket secondary structure
((((..(((((...((((((((((((((((.(((...(((((.((((((..........)).)))).)))))...))).))))))).)))))))))...)
)))).....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
TCGAGTACCAACCACGTTAAGAATATTGCGTAGGCCTTTGCTTCGAAAGAAACACTTTACTGTTCGCAGCAATCTCCTCCGCAATATTTTTTGATGAATT
TGGTTAAAATTGAG
dot-bracket secondary structure
((((..(((((...((((((((((((((((.(((...(((((.((((((..........)).)))).)))))...))).))))))).)))))))))...)
)))).....)))).
SIMILARITIES| miRBase cbr-mir-242: 0.0000000000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-242: 2e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
