ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-248
source: miRBase, original name: crm-mir-248 (MI0011063)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACACGTGCACGGATACGCTC miRNA* GCGATATCCAGCCGTTGTATTC mismatches: 2 bulges: 4 |
pre-miRNA
GCTAGTATTTTTTGGCAGAGATTACGATTAGCGATATCCAGCCGTTGTATTCAATAGCGCATTTGAGTACACGTGCACGGATACGCTCATCGTTTTTGTA
TTGCCACTTCGATTGAGT
dot-bracket secondary structure
(((.........((((((.((..(((((.((((.(((((.(((((.((((((((........))))))))))).))..))))))))).)))))..))...
)))))).........)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GCTAGTATTTTTTGGCAGAGATTACGATTAGCGATATCCAGCCGTTGTATTCAATAGCGCATTTGAGTACACGTGCACGGATACGCTCATCGTTTTTGTA
TTGCCACTTCGATTGAGT
dot-bracket secondary structure
(((.........((((((.((..(((((.((((.(((((.(((((.((((((((........))))))))))).))..))))))))).)))))..))...
)))))).........)))
SIMILARITIES| miRBase cel-mir-248: 0.000000000006 PMRD no hits microPC no hits | UniProt no hits RFAM mir-248: 2e-52 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
