ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-1
source: miRBase, original name: ppc-mir-1 (MI0011127)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGT miRNA* GTACTTCTTTGCAGCCCCATA mismatches: 3 bulges: 1 |
pre-miRNA
CTCTCACTCCTCATTCACCGTTCCGTACTTCTTTGCAGCCCCATACTTGCCCGCATGAAGTGGTTATGGAATGTAAAGAAGTATGTAATGGTCGAGGCGA
GAGC
dot-bracket secondary structure
(((((...((((....((((((.((((((((((((((...(((((.....((((.....)))).)))))..)))))))))))))).)))))).)))).))
))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
CTCTCACTCCTCATTCACCGTTCCGTACTTCTTTGCAGCCCCATACTTGCCCGCATGAAGTGGTTATGGAATGTAAAGAAGTATGTAATGGTCGAGGCGA
GAGC
dot-bracket secondary structure
(((((...((((....((((((.((((((((((((((...(((((.....((((.....)))).)))))..)))))))))))))).)))))).)))).))
))).
SIMILARITIES| miRBase lgi-mir-1: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 5e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
