miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST038600
species: Pristionchus pacificus
source: miRBase, original name: ppc-mir-42a (MI0011129)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACCGGGTGAACATCCATTGC

miRNA*
AGTGGGTGTCTGCCTCGGTCTGAAG

mismatches: 2
bulges: 3

View larger
pre-miRNA
GTGCATTCAGTGCAGCCCGCAGTGGGTGTCTGCCTCGGTCTGAAGTGTGAGATGCATGATCCTCCGTTCTTCACCGGGTGAACATCCATTGCGGGCGCAT
GCACC


dot-bracket secondary structure
(((((.....(((.(((((((((((((((..(((.((((..((((...(((..........)))....)))))))))))..)))))))))))))))))))
)))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




Liczniki na strone;