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ABOUT THIS RECORD

ID: MNEST038602
species: Pristionchus pacificus
miRNA family: mir-44
source: miRBase, original name: ppc-mir-45 (MI0011128)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGAGACACATTCAGCT

miRNA*
CTGGATGTGTGATCTTGGTCGTA

mismatches: 3
bulges: 2

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pre-miRNA
GAGTCGCAGCCCCGCTCTGGATGTGTGATCTTGGTCGTATCCGCGCAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTCT

dot-bracket secondary structure
((((((..((((((..((((((((((..(((.(((((((((.(.((....)).)...)).)))))))))).))))))))))..)))))))))))).


SIMILARITIES
miRBase crm-mir-45: 0.000000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-44: 1e-46

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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