ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-63
source: miRBase, original name: ppc-mir-63c-3 (MI0011141)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGACACTCAATGCGAGATGGG miRNA* CATTCGCATGAGTTTCATGGA mismatches: 1 bulges: 2 |
pre-miRNA
GGTACCCGAACCATAATCCATGTGGGGTTCCATTCGCATGAGTTTCATGGACTCGATTCATAGATCTATGACACTCAATGCGAGATGGGACCTCGGTGGA
CCATTGGTACGGTACC
dot-bracket secondary structure
((((((.(.((((...(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))
....)))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GGTACCCGAACCATAATCCATGTGGGGTTCCATTCGCATGAGTTTCATGGACTCGATTCATAGATCTATGACACTCAATGCGAGATGGGACCTCGGTGGA
CCATTGGTACGGTACC
dot-bracket secondary structure
((((((.(.((((...(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))
....)))).)))))))
SIMILARITIES| miRBase ppc-mir-63c-4: 1e-56 PMRD no hits microPC no hits | UniProt no hits RFAM mir-63: 2e-55 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
