ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-63
source: miRBase, original name: ppc-mir-63c-4 (MI0011142)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGACACTCAATGCGAGATGGG miRNA* CATTCGCATGAGTTTCATGGA mismatches: 1 bulges: 2 |
pre-miRNA
GGTACCCGAACCATAATCCATGTGGGGTTCCATTCGCATGAGTTTCATGGACTCGATTCATAGATCTATGACACTCAATGCGAGATGGGACCTCGGTGGA
CCAATGGTTCGGTACC
dot-bracket secondary structure
((((((.(((((((..(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))
...)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GGTACCCGAACCATAATCCATGTGGGGTTCCATTCGCATGAGTTTCATGGACTCGATTCATAGATCTATGACACTCAATGCGAGATGGGACCTCGGTGGA
CCAATGGTTCGGTACC
dot-bracket secondary structure
((((((.(((((((..(((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).))))))))))))))))
...)))))))))))))
SIMILARITIES| miRBase ppc-mir-63c-2: 4e-59 PMRD no hits microPC no hits | UniProt no hits RFAM mir-63: 3e-60 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
