ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-124
source: miRBase, original name: ppc-mir-124 (MI0011133)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCC miRNA* CTTTCACCGGTGACTTTAGT mismatches: 2 bulges: 2 |
pre-miRNA
GAAGGGTCGTTAATTCACTTCGCTTTCACCGGTGACTTTAGTGCTTTGTCACAGAGAGAACTAAGGCACGCGGTGAATGCCAAGAGAATAACGAATCCAT
CA
dot-bracket secondary structure
((.(((((((((.(((.(((.((.((((((((((.(((((((.(((((...)))))...)))))))))).))))))).)).))).)))))))).)))).)
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GAAGGGTCGTTAATTCACTTCGCTTTCACCGGTGACTTTAGTGCTTTGTCACAGAGAGAACTAAGGCACGCGGTGAATGCCAAGAGAATAACGAATCCAT
CA
dot-bracket secondary structure
((.(((((((((.(((.(((.((.((((((((((.(((((((.(((((...)))))...)))))))))).))))))).)).))).)))))))).)))).)
).
SIMILARITIES| miRBase dre-mir-124-5: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 3e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
