ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-252
source: miRBase, original name: ppc-mir-252 (MI0011137)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAAGTAGTAGTGCCGCAGGT miRNA* CTATAGCCTTCTGCTTAACA mismatches: 5 bulges: 1 |
pre-miRNA
GATCACCTATCACTCTGTCCGGGTTCTAAGTAGTAGTGCCGCAGGTAACCAACAATTGAGAGGTTTACCTATAGCCTTCTGCTTAACACCTTGAAGAGTT
GATCT
dot-bracket secondary structure
(((((......(((((.((.((((..(((((((.((.((...((((((((...........)).))))))...)))).)))))))..)))).))))))))
)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GATCACCTATCACTCTGTCCGGGTTCTAAGTAGTAGTGCCGCAGGTAACCAACAATTGAGAGGTTTACCTATAGCCTTCTGCTTAACACCTTGAAGAGTT
GATCT
dot-bracket secondary structure
(((((......(((((.((.((((..(((((((.((.((...((((((((...........)).))))))...)))).)))))))..)))).))))))))
)))).
SIMILARITIES| miRBase crm-mir-252: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-252: 4e-53 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
