ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-2235
source: miRBase, original name: ppc-mir-2235-7 (MI0011180)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACCGGGAGCATTGTATGATC miRNA* TCATTCAATATTGCCGGTTTGAAC mismatches: 4 bulges: 2 |
pre-miRNA
GGGCCGCTCTTGCCCGCTCATTCAATATTGCCGGTTTGAACGAAATTGATCAGTTCACCGGGAGCATTGTATGATCGGGCTTCGGACCCT
dot-bracket secondary structure
((((((.....(((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).)))))..))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GGGCCGCTCTTGCCCGCTCATTCAATATTGCCGGTTTGAACGAAATTGATCAGTTCACCGGGAGCATTGTATGATCGGGCTTCGGACCCT
dot-bracket secondary structure
((((((.....(((((.((((.((((.((.(((((..((((((......)).))))))))).)).)))).)))).)))))..))).))).
SIMILARITIES| miRBase ppc-mir-2235-4: 4e-46 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppc-mir-2235-1 from miRBase (MNEST038646) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
