ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-2238
source: miRBase, original name: ppc-mir-2238b-1 (MI0011182)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGACAATCGAGTGGGTGAG miRNA* CGTCTACTCCTTTCGTCATTCG mismatches: 5 bulges: 1 |
pre-miRNA
CCCTCCATGGAACTAGTCTGCCTACTTCCCGTCTACTCCTTTCGTCATTCGTTGATACGAATACGAATGACAATCGAGTGGGTGAGAAGGAAGACTTGCT
TCCTTGGTTGGT
dot-bracket secondary structure
((..(((.(((((.(((((.....((((.(..((((((..((.(((((((((..........)))))))))))..))))))..).))))..))))).).)
))).)))..)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
CCCTCCATGGAACTAGTCTGCCTACTTCCCGTCTACTCCTTTCGTCATTCGTTGATACGAATACGAATGACAATCGAGTGGGTGAGAAGGAAGACTTGCT
TCCTTGGTTGGT
dot-bracket secondary structure
((..(((.(((((.(((((.....((((.(..((((((..((.(((((((((..........)))))))))))..))))))..).))))..))))).).)
))).)))..)).
SIMILARITIES| miRBase ppc-mir-2238b-2: 5e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-2238: 4e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
