ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-2239
source: miRBase, original name: ppc-mir-2239-1 (MI0011232)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTAGGAAATATCTT miRNA* mismatches: 5 bulges: 43 |
pre-miRNA
GCGAGACGAGAGCGAGCGTCGCCTAGGTCTTTCCCCCGCTGCGATTCAGAAGACACGAATGGCAGTGTAGGAAATATCTTACTAAAATCGGCGAAAAGCG
TGGGCGTCAGTTTGCA
dot-bracket secondary structure
...........((((((..((((((.(..((((((..(((((.((((.........)))).)))))((((((....)))))).......)).))))..).
))))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GCGAGACGAGAGCGAGCGTCGCCTAGGTCTTTCCCCCGCTGCGATTCAGAAGACACGAATGGCAGTGTAGGAAATATCTTACTAAAATCGGCGAAAAGCG
TGGGCGTCAGTTTGCA
dot-bracket secondary structure
...........((((((..((((((.(..((((((..(((((.((((.........)))).)))))((((((....)))))).......)).))))..).
))))))...)))))).
SIMILARITIES| miRBase ppc-mir-2239-2: 2e-61 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppc-mir-2239-2 from miRBase (MNEST038669) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
